Index

_

_getter_module_from_path() (in module n_io)

_make_getter_with_default() (in module n_io) _module_name_from_path() (in module n_io)

A

annotation_converter module

apply_255_lut() (in module zephir.zephod.channels) auto_annotate() (in module zephir.methods.auto_annotate)

B

build_annotations() (in module zephir.methods.build_annotations) build_models() (in module zephir.methods.build_models) build_pdists module

build_springs() (in module zephir.methods.build_springs) build_tree module build_tree() (in module build_tree)

C

cellid_to_annotator() (in module annotation_converter) (in module converter) Container (class in zephir.models.container) conv() (in module zephir.zephod.model)

convert_array_to_list() (in module converter) convert_struct_to_dict() (in module converter) converter module corr_loss() (in module zephir.models.losses)

D

db_test() (in module converter) dist_corrcoef() (in module build_pdists) (in module recommend_frames)

double_exp() (in module extract_traces) downsample() (in module zephir.annotator.main)

E

extract_traces module

extract_traces() (in module extract_traces)

F

forward() (zephir.models.zephir.ZephIR method) (zephir.zephod.model.ZephOD method)

G

generate_synthetic_data() (in module zephir.zephod.augment) get() (zephir.models.container.Container method) get_all_pdists() (in module build_pdists) (in module recommend_frames) get_annotation() (in module n_io) get_annotation_df() (in module n_io) get_annotations() (in module zephir.annotator.main) get_app_metadata() (in module zephir.annotator.main) get_binary_image() (in module zephir.annotator.main) get_checkpoint() (in module n_io) get_data() (in module n_io) get_env() (in module vddiag) get_gvol() (in module zephir.annotator.main) get_metadata() (in module n_io)

get_mip_x() (in module zephir.annotator.main) get_mip_y() (in module zephir.annotator.main) get_mip_z() (in module zephir.annotator.main) get_optimization_trajectory() (in module zephir.methods.get_optimization_trajectory) get_partial_pdists() (in module build_pdists) (in module recommend_frames) get_rgba_volume() (in module zephir.annotator.main) get_slice() (in module n_io) get_thumbnail() (in module build_pdists) (in module recommend_frames) get_vol() (in module zephir.annotator.main) get_volume() (in module zephir.annotator.main) get_x() (in module zephir.annotator.main) get_y() (in module zephir.annotator.main) get_z() (in module zephir.annotator.main)

H

handle_annotation() (in module zephir.annotator.main) handle_annotations() (in module zephir.annotator.main) handle_load() (in module zephir.annotator.main)

handle_rpc() (in module zephir.annotator.main) handle_save() (in module zephir.annotator.main) handle_worldline() (in module zephir.annotator.main) handle_worldlines() (in module zephir.annotator.main)

I

identify() (in module zephir.zephod.augment)

L

load_annotations() (in module annotation_converter) (in module converter)

load_checkpoint() (in module n_io)

M

main() (in module extract_traces) (in module recommend_frames) (in module zephir.annotator.main) (in module zephir.main) (in module zephir.methods.auto_annotate) (in module zephir.methods.overwrite_checkpoint) (in module zephir.zephod.main) (in module zephir.zephod.train) module annotation_converter build_pdists build_tree converter extract_traces n_io recommend_frames save_movie track_all vddiag zephir.annotator.main zephir.main zephir.methods.auto_annotate zephir.methods.build_annotations zephir.methods.build_models zephir.methods.build_springs zephir.methods.get_optimization_trajectory zephir.methods.overwrite_checkpoint zephir.methods.plot_loss_maps zephir.methods.save_annotations zephir.methods.track_frame zephir.models.container zephir.models.losses zephir.models.zephir zephir.zephod.augment zephir.zephod.channels zephir.zephod.main zephir.zephod.model zephir.zephod.train

N

n_io module

O

overwrite_checkpoint() (in module zephir.methods.overwrite_checkpoint)

P

plot_loss_maps() (in module zephir.methods.plot_loss_maps)

preprocess() (zephir.zephod.model.ZephOD method)

R

recommend_frames module recommend_frames() (in module recommend_frames) reg_d() (in module zephir.models.losses) reg_n() (in module zephir.models.losses)

reg_t() (in module zephir.models.losses) resize_neuron() (in module zephir.zephod.augment) rl_deconvolution() (in module zephir.zephod.channels) rotate_neuron() (in module zephir.zephod.augment) run_zephir() (in module zephir.main) run_zephod() (in module zephir.zephod.main)

S

save_annotations() (in module annotation_converter) (in module zephir.methods.save_annotations) save_movie module save_movie() (in module save_movie) serve_colormaps() (in module zephir.annotator.main)

serve_dir_directory_index() (in module zephir.annotator.main) serve_favicon() (in module zephir.annotator.main) serve_manifest() (in module zephir.annotator.main) serve_static_css() (in module zephir.annotator.main) serve_static_js() (in module zephir.annotator.main) sharpen() (in module zephir.zephod.channels)

T

threshold() (in module zephir.zephod.channels) track_all module

track_all() (in module track_all) track_frame() (in module zephir.methods.track_frame) train_model() (in module zephir.zephod.train)

U

update() (zephir.models.container.Container method)

update_checkpoint() (in module n_io) update_metadata() (in module n_io)

V

vddiag module

Z

ZephIR (class in zephir.models.zephir) zephir.annotator.main module zephir.main module zephir.methods.auto_annotate module zephir.methods.build_annotations module zephir.methods.build_models module zephir.methods.build_springs module zephir.methods.get_optimization_trajectory module zephir.methods.overwrite_checkpoint module zephir.methods.plot_loss_maps module zephir.methods.save_annotations module

zephir.methods.track_frame module zephir.models.container module zephir.models.losses module zephir.models.zephir module zephir.zephod.augment module zephir.zephod.channels module zephir.zephod.main module zephir.zephod.model module zephir.zephod.train module ZephOD (class in zephir.zephod.model)