Index

A

add_deterministic_ids() (Neurons.Image method) add_meta_data() (Neurons.Image method) add_neuron() (Neurons.Image method) add_probabilistic_ids() (Neurons.Image method) add_probabilistic_probs() (Neurons.Image method) add_ranks() (Neurons.Image method) addToBrain() (Neurons.Neuron method) aligned_xyzRGB (Neurons.Neuron attribute)

annotate() (Neurons.Neuron method) annotation (Neurons.Neuron attribute) annotation_confidence (Neurons.Neuron attribute) asym_deterministic_LR_neurons (Neurons.Hermaphrodite attribute) (Neurons.Male attribute) asym_stochastic_LR_neurons (Neurons.Hermaphrodite attribute) (Neurons.Male attribute) atlas_version (Neurons.Image attribute)

B

baseline (Neurons.Neuron attribute)

bodypart (Neurons.Image attribute)

C

color (Neurons.Neuron attribute)

color_readout (Neurons.Neuron attribute) covariance (Neurons.Neuron attribute)

D

del_neuron() (Neurons.Image method) delete_annotation() (Neurons.Neuron method) delete_annotations() (Neurons.Image method)

delete_model_ID() (Neurons.Neuron method) delete_model_IDs() (Neurons.Image method) deterministic_id (Neurons.Neuron attribute)

F

find_rank() (Neurons.Image method) find_user_id_neuron() (Neurons.Image method) find_user_id_neurons() (Neurons.Image method)

flipLR() (Neurons.Hermaphrodite static method) (Neurons.Male static method) flipLR_annotations() (Neurons.Image method)

G

get_3d_reconstruction() (Neurons.Neuron method) get_3d_segments() (Neurons.Image method) get_3d_shape() (Neurons.Image method) get_aligned_xyzRGBs() (Neurons.Image method) get_annotation_confidences() (Neurons.Image method) get_annotations() (Neurons.Image method) get_baselines() (Neurons.Image method) get_colors() (Neurons.Image method) get_colors_readout() (Neurons.Image method) get_covariances() (Neurons.Image method) get_deterministic_ids() (Neurons.Image method) get_is_annotations_on() (Neurons.Image method) get_is_emphasized() (Neurons.Image method) get_line_sizes() (Neurons.Image method) get_marker_color() (Neurons.Neuron method) get_marker_colors() (Neurons.Image method) get_marker_size() (Neurons.Neuron method) get_marker_sizes() (Neurons.Image method) get_meta_data() (Neurons.Image method) get_positions() (Neurons.Image method) get_probabilistic_ids() (Neurons.Image method) get_probabilistic_probs() (Neurons.Image method) get_ranks() (Neurons.Image method) get_truncations() (Neurons.Image method) getAnteriorMidbody() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getAnteriorPharynx() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getCentralMidbody() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getClasses() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getColors() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getDorsalGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getDorsoRectalGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getGanglia() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getGanglionNames() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getHermaphroditeBirthText() (Neurons.NeuronBirth static method) getHermaphroditeBirthTimes() (Neurons.NeuronBirth static method) getHermaphroditeStages() (Neurons.NeuronBirth static method) getLeftAnteriorGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method)

getLeftCloacalGanglion() (Neurons.Male static method) getLeftLateralGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getLeftLumbarGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getLeftPreAnalGanglion() (Neurons.Male static method) getLeftRays() (Neurons.Male static method) getMaleBirthText() (Neurons.NeuronBirth static method) getMaleBirthTimes() (Neurons.NeuronBirth static method) getNeuronClass() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getNeuronColor() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getNeurons() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getNeuronsOrderedByGanglia() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getNeuronsOrderedByGangliaLR() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getNeuroPALColorClass() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getNeuroPALName() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getOutliers() (Neurons.Image method) getPosteriorMidbody() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getPosteriorPharynx() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getPreAnalGanglion() (Neurons.Hermaphrodite static method) getRetroVesicularGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getRightAnteriorGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getRightCloacalGanglion() (Neurons.Male static method) getRightLateralGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getRightLumbarGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getRightPreAnalGanglion() (Neurons.Male static method) getRightRays() (Neurons.Male static method) getVariableNeurons() (Neurons.Male static method) getVentralGanglion() (Neurons.Hermaphrodite static method) (Neurons.Male static method) getVentralNerveCord() (Neurons.Hermaphrodite static method) (Neurons.Male static method)

H

Hermaphrodite (class in Neurons)

I

Image (class in Neurons) Image() (Neurons.Image method) is_all_annotated() (Neurons.Image method) is_annotation_on (Neurons.Neuron attribute) is_any_annotated() (Neurons.Image method) is_any_auto_ID() (Neurons.Image method) is_emphasized (Neurons.Neuron attribute)

is_selected (Neurons.Neuron attribute) isAWC() (Neurons.Hermaphrodite static method) (Neurons.Male static method) isCell() (Neurons.Hermaphrodite static method) (Neurons.Male static method) isNeuron() (Neurons.Hermaphrodite static method) (Neurons.Male static method)

L

late_herm_neuron_stages (Neurons.NeuronBirth attribute)

late_herm_neuron_times (Neurons.NeuronBirth attribute) late_herm_neurons (Neurons.NeuronBirth attribute)

M

Male (class in Neurons) meta_data (Neurons.Image attribute)

mirror_image_Z() (Neurons.Image method) mirror_neurons_Z() (Neurons.Image method)

N

nearest_unannotated() (Neurons.Image method) nearest_unannotated_z() (Neurons.Image method) Neuron (class in Neurons) NeuronBirth (class in Neurons) neurons (Neurons.Image attribute) neuronStartsWith() (Neurons.Hermaphrodite static method) (Neurons.Male static method) non_LR_neurons (Neurons.Hermaphrodite attribute) (Neurons.Male attribute) non_neuronal_cells (Neurons.Hermaphrodite attribute) (Neurons.Male attribute) num_auto_id_neurons() (Neurons.Image method) num_neurons() (Neurons.Image method) num_user_id_neurons() (Neurons.Image method)

num_user_unid_neurons() (Neurons.Image method) numAnteriorMidbodyNeurons() (Neurons.Hermaphrodite static method) (Neurons.Male static method) numCentralMidbodyNeurons() (Neurons.Hermaphrodite static method) (Neurons.Male static method) numHeadNeurons() (Neurons.Hermaphrodite static method) (Neurons.Male static method) numMidbodyNeurons() (Neurons.Hermaphrodite static method) (Neurons.Male static method) numNeurons() (Neurons.Hermaphrodite static method) (Neurons.Male static method) numPosteriorMidbodyNeurons() (Neurons.Hermaphrodite static method) (Neurons.Male static method) numTailNeurons() (Neurons.Hermaphrodite static method) (Neurons.Male static method)

O

outlier (Neurons.Neuron attribute)

P

position (Neurons.Neuron attribute)

probabilistic_ids (Neurons.Neuron attribute) probabilistic_probs (Neurons.Neuron attribute)

R

rank (Neurons.Neuron attribute) rank_neuron_max() (Neurons.Image method) remove() (Neurons.Neuron method) rotate() (Neurons.Image method) (Neurons.Neuron method) rotate_image_X_180() (Neurons.Image method) rotate_image_Y_180() (Neurons.Image method) rotate_image_Z_270() (Neurons.Image method)

rotate_image_Z_90() (Neurons.Image method) rotate_neurons_X_180() (Neurons.Image method) rotate_neurons_Y_180() (Neurons.Image method) rotate_neurons_Z_270() (Neurons.Image method) rotate_neurons_Z_90() (Neurons.Image method) rotate_X_180() (Neurons.Image method) rotate_Y_180() (Neurons.Image method) rotate_Z_270() (Neurons.Image method) rotate_Z_90() (Neurons.Image method)

S

scale (Neurons.Image attribute) stripLR() (Neurons.Hermaphrodite static method) (Neurons.Male static method) stripOnOff() (Neurons.Hermaphrodite static method) (Neurons.Male static method)

sym_2_fold_DV_neurons (Neurons.Hermaphrodite attribute) (Neurons.Male attribute) sym_4_fold_DV_neurons (Neurons.Hermaphrodite attribute) (Neurons.Male attribute) sym_6_fold_DV_neurons (Neurons.Hermaphrodite attribute) (Neurons.Male attribute)

T

to_superpixel() (Neurons.Image method)

truncation (Neurons.Neuron attribute)

U

unmarshall() (Neurons.Neuron static method) unrank_neuron() (Neurons.Image method)

update_colors() (Neurons.Image method) user_id_neuron_names() (Neurons.Image method) user_id_neurons() (Neurons.Image method)

V

variable_neurons (Neurons.Male attribute)