Index

A

add_to_image() (Methods.AutoId method) annotation_weight (Methods.AutoId attribute) apply_colormap() (Methods.ChunkyMethods static method), [1] apply_slice() (Methods.ChunkyMethods static method)

apply_video() (Methods.ChunkyMethods static method), [1] apply_vol() (Methods.ChunkyMethods static method), [1] area_filter() (Methods.Preprocess static method) AutoDetect (class in Methods) AutoId (class in Methods)

B

BatchDetect() (Methods.AutoDetect static method) (Methods.NNDetect static method)

BatchId() (Methods.AutoId static method)

C

calc_pp_size() (Methods.ChunkyMethods static method) ChunkyMethods (class in Methods) compute_assignments() (Methods.AutoId method)

constrain_eigenvalues() (Methods.AutoDetect static method) create_patches() (Methods.NNDetect static method) crop_size (Methods.NNDetect attribute)

D

debleed() (Methods.ChunkyMethods static method) decimate_frame() (Methods.Preprocess static method)

detect() (Methods.AutoDetect method) (Methods.NNDetect static method)

E

evaluation() (Methods.AutoDetect static method)

F

filter_frame() (Methods.Preprocess static method) filter_gut() (Methods.Preprocess static method) filter_gut_lysosomes() (Methods.Preprocess static method)

filter_small_artifacts() (Methods.Preprocess static method) find_outlier() (in module Methods) fit_gaussian() (Methods.AutoDetect method) fsize (Methods.AutoDetect attribute)

G

gaussian_cost() (Methods.AutoDetect static method) get_filter() (Methods.AutoDetect static method)

get_gaussian() (Methods.AutoDetect static method) global_alignment() (Methods.AutoId method)

H

histmatch_frame() (Methods.Preprocess static method)

I

id() (Methods.AutoId method) instance() (Methods.AutoDetect static method) (Methods.AutoId static method) (Methods.NNDetect static method) (Methods.Preprocess static method)

isBodyID() (Methods.AutoId static method) iter_rwc (Methods.AutoId attribute) iter_sinkhorn (Methods.AutoId attribute)

L

load_proc_image() (Methods.ChunkyMethods static method)

local_alignment() (Methods.AutoId static method) logsumexp() (in module Methods)

M

major_axis_align() (Methods.AutoId static method) manual_artifact_removal() (Methods.Preprocess static method) MatchHist() (in module Methods) max_fp (Methods.AutoId attribute) max_log_likelihood (Methods.AutoId attribute)

MCR_solver() (Methods.AutoId static method) min_log_likelihood (Methods.AutoId attribute) model (Methods.NNDetect attribute) model_version (Methods.NNDetect attribute) munkres() (in module Methods) munkres_extended() (in module Methods)

N

ncandidates (Methods.AutoId attribute) NN_model (Methods.NNDetect attribute)

NNDetect (class in Methods) NNDetect() (Methods.NNDetect method)

O

options (Methods.AutoDetect attribute)

P

p_fp (Methods.AutoId attribute) pad_to_shape() (Methods.NNDetect static method) pdist2_maha() (Methods.AutoId static method) placement() (Methods.Utils static method) post_process() (Methods.NNDetect static method)

predict_nn() (Methods.NNDetect method) prepare_image() (Methods.NNDetect static method) Preprocess (class in Methods) proc_target_slices() (Methods.ChunkyMethods static method) pst_shape (Methods.NNDetect attribute)

R

removeNearbyNeurons() (Methods.Utils static method)

rotmat() (Methods.AutoId static method) run_histmatch() (in module Methods)

S

save_for_parfor() (Methods.Utils static method) scale (Methods.AutoDetect attribute) scaled_rotation() (Methods.AutoId static method) simulate_gaussian() (Methods.Utils static method) simulate_mvt() (Methods.Utils static method) sinkhorn_logspace() (Methods.AutoId static method) sinkhorn_logspace_extended() (Methods.AutoId static method) sp2video() (Methods.Utils static method)

spectral_unmix() (Methods.ChunkyMethods static method) stream_neurons() (Methods.ChunkyMethods static method) stride (Methods.NNDetect attribute) sub_sp() (Methods.Utils static method) subcube() (Methods.Utils static method) superpose() (Methods.Utils static method) supervoxels (Methods.AutoDetect attribute) szext (Methods.AutoDetect attribute)

T

theta (Methods.AutoId attribute)

threshold_frame() (Methods.Preprocess static method)

U

union_sp() (Methods.Utils static method) update_confidences() (Methods.AutoId method) update_id() (Methods.AutoId method)

update_log_likelihood() (Methods.AutoId method) update_permutation() (Methods.AutoId static method) Utils (class in Methods)

V

vec() (Methods.AutoId static method)

visualize() (Methods.AutoId method) (Methods.NNDetect static method)

Z

zscore_frame() (Methods.Preprocess static method)