Index

A

age (Program.subject attribute) arr_idx (Program.channel attribute)

assign_gui() (Program.channel method) autosort() (DataHandling.Helpers.nd2 static method)

B

body (Program.subject attribute)

C

c (Program.volume attribute) channel (class in Program) channel() (Program.channel method) channel_keys (DataHandling.Helpers.nd2 attribute) channels (Program.volume attribute) channels_from_file() (DataHandling.Helpers.nd2 static method) color (Program.channel attribute) convert() (Program.volume method)

create_channels() (DataHandling.writeNWB static method) create_device() (DataHandling.writeNWB static method) create_file() (DataHandling.writeNWB static method) create_module() (DataHandling.writeNWB static method) create_neurons() (DataHandling.Helpers.npal static method) create_segmentation() (DataHandling.writeNWB static method) create_traces() (DataHandling.writeNWB static method) create_volume() (DataHandling.writeNWB static method)

D

DataHandling (module) DataHandling.Helpers (module) delete_channel() (Program.channel method) device (Program.volume attribute)

dims (Program.volume attribute) dtype (Program.volume attribute) dtype_max (Program.volume attribute) dtype_str (Program.volume attribute)

E

emission (Program.channel attribute)

excitation (Program.channel attribute)

F

fluorophore (Program.channel attribute)

fmt (Program.volume attribute) freeze() (Program.channel method)

G

gamma (Program.channel attribute) get() (Program.volume method) get_channel_names() (DataHandling.Helpers.nd2 static method) (DataHandling.Helpers.nwb static method) get_channels() (DataHandling.Helpers.mat static method) (DataHandling.Helpers.nd2 static method) get_dimensions() (DataHandling.Helpers.mat static method) (DataHandling.Helpers.nd2 static method)

get_plane() (DataHandling.Helpers.mat static method) (DataHandling.Helpers.nd2 static method) (DataHandling.Helpers.nwb static method) get_ttl() (DataHandling.Helpers.nd2 static method) get_ttl_data() (DataHandling.Helpers.nd2 static method) get_ttl_keys() (DataHandling.Helpers.nd2 static method) gui (Program.channel attribute) gui_idx (Program.channel attribute)

H

h5 (class in DataHandling.Helpers)

I

identify() (Program.channel method) imreadAny() (in module DataHandling) imreadCZI() (in module DataHandling) imreadLif() (in module DataHandling) imreadND2() (in module DataHandling) imreadVlab() (in module DataHandling)

info() (Program.volume method) is_known (Program.channel attribute) is_pseudocolor() (Program.channel method) is_rendered (Program.channel attribute) is_rgb (Program.channel attribute) is_valid_dtype (Program.volume attribute) is_video (Program.volume attribute)

J

java (class in DataHandling.Helpers)

K

key_map (DataHandling.Helpers.nd2 attribute)

L

lh_in (Program.channel attribute) lh_out (Program.channel attribute) load() (Program.volume method)

load_metadata() (DataHandling.Helpers.mat static method) load_tracks() (DataHandling.Helpers.h5 method) (DataHandling.Helpers.nwb static method)

M

mat (class in DataHandling.Helpers)

max_characters (DataHandling.Helpers.java attribute)

N

name (Program.volume attribute) name_substr (DataHandling.Helpers.nd2 attribute) native_dims (Program.volume attribute) nc (Program.volume attribute) nd2 (class in DataHandling.Helpers) NeuroPALImage (class in DataHandling)

notes (Program.subject attribute) npal (class in DataHandling.Helpers) nt (Program.volume attribute) nwb (class in DataHandling.Helpers) nx (Program.volume attribute) ny (Program.volume attribute) nz (Program.volume attribute)

O

open() (DataHandling.Helpers.mat static method) (DataHandling.Helpers.nd2 static method) (DataHandling.Helpers.nwb static method) (DataHandling.NeuroPALImage static method)

P

parent (Program.channel attribute) parse_hashtable() (DataHandling.Helpers.java static method) path (Program.volume attribute)

PNGViewer (class in DataHandling) processing_steps (Program.volume attribute) Property1 (DataHandling.Helpers.tif attribute)

R

read() (Program.volume method) read_class (Program.volume attribute) read_metadata() (Program.volume method) read_mod (Program.volume attribute) read_obj (Program.volume attribute)

readAnnoH5() (in module DataHandling) readStimFile() (in module DataHandling) readTrackmate() (in module DataHandling) render() (Program.volume method) rgb (Program.volume attribute)

S

search() (DataHandling.Helpers.nwb static method) search_key() (DataHandling.Helpers.java static method) set() (Program.channel method) (Program.subject method) settings (Program.volume attribute) sex (Program.subject attribute)

show() (DataHandling.PNGViewer static method) strain (Program.subject attribute) styling (Program.channel attribute) subject (class in Program) (Program.volume attribute) subject() (Program.subject method) sysOpenPDF() (in module DataHandling)

T

t (Program.volume attribute) tif (class in DataHandling.Helpers) to_npal() (DataHandling.Helpers.nd2 static method) (DataHandling.Helpers.nwb static method) (DataHandling.Helpers.tif static method)

to_valid() (DataHandling.Helpers.java static method)

U

update() (Program.channel method)

update_channels() (Program.volume method)

V

validate() (Program.channel method) (Program.subject method) value_to_string() (DataHandling.Helpers.java static method)

volume (class in Program) volume() (Program.volume method) volume_path() (DataHandling.Helpers.nwb static method)

W

write() (Program.volume method) write_data() (DataHandling.Helpers.nwb static method)

write_order() (DataHandling.writeNWB static method) writeNWB (class in DataHandling) writeTrackMate() (in module DataHandling)

X

x (Program.volume attribute)

Y

y (Program.volume attribute)

Z

z (Program.volume attribute)